Publications


  - D. A. Ouattara, W. Abou-Jaoudé and M. Kaufman, “From structure to dynamics: Frequency tuning in the p53-Mdm2 network. II. Differential and stochastic approaches”, J. Theor. Biol. (2010), 264, p. 1177-1189.

- W. Abou-Jaoudé, D. A. Ouattara and M. Kaufman, “From structure to dynamics: Frequency tuning in the p53-Mdm2 network. I. Logical approach”, J. Theor. Biol. (2009), 258, p. 561-577.

- Ruiz, L., Traskine, M., Ferrer, I., Castro, E., Leal, J. F. M., Kaufman, M. and Carnero, A., “Characterization of the p53 response to oncogene-induced senescence”, PLOS One (2008), 3 (9), p. e3230. URL: http://dx.doi.org/10.1371/journal.pone.0003230.

- R. Thomas and M. Kaufman, “Analyse logique des circuits de rétroaction”, in “Modelling Complex Biological Systems in the Context of Genomics” (Eds P. Amar, F. Képès, V. Norris, B. Vandenbunder), EDP Sciences (2008), p. 13-51.

- M.Kaufman, C. Soulé, and R. Thomas, “A new necessary condition on interaction graphs for multistationarity”, J. Theor. Biol. (2007), 248, p. 675-685.

- R. Thomas and M. Kaufman, “Frontier diagrams: Partition of phase space according to the signs of the eigenvalues or to the sign patterns of the circuits”, Bifurcation and Chaos (2005), 15, p. 3051-3074.

- M. Kaufman and R. Thomas, “Emergence of Complex Behaviour from Simple Circuit Structures”, C. R. Acad. Sci. Paris Biologies (2003), 326, p. 205-214.

- M. Louis, L. Holm, L. Sanchez and M. Kaufman, “A theoretical model for the regulation of Sex-lethal, a gene that controls sex determination and dosage compensation in Drosophila melanogaster”, Genetics (2003), 165, p. 1355-1384.

- R. Thomas and M. Kaufman, “Conceptual Tools for the Integration of Data”, C. R. Acad. Sci. Paris Biologies (2002), 325, p. 505-514.

- R. Thomas and M. Kaufman, “Multistationarity, the Basis of Cell Differentiation and Memory. I. Structural Conditions of Multistationarity and Other Non-Trivial Behaviour”, Chaos (2001), 11, p. 170-179.

- R. Thomas and M. Kaufman, “Multistationarity, the Basis of Cell Differentiation and Memory. II. Logical Analysis of Regulatory Networks in Terms of Feedback Circuits”, Chaos (2001), 11, p. 180-195.

- R. Thomas and M. Kaufman, “Comportements complexes et circuits logiques”, in “L’homme devant l'incertain” (Dir. I. Prigogine), Odile Jacob (2001), p. 103-118.

- J. Guespin and M. Kaufman, “Positive Feedback Circuits and Adaptive Regulations in Bacteria”, Acta Biotheoretica (2001), 49, p. 207-218.

- C. Letellier, M. Kaufman and R. Thomas, “Classification des systèmes dynamiques par circuits de rétroaction”, in “Actes du 3ième colloque sur le Chaos Temporel et le Chaos Spatio-Temporel” (2001), p.103-109.

- J. Demongeot, M. Kaufman and R. Thomas, “Positive Feedback Circuits and Memory”, C. R. Acad. Sci. Paris, Life Sciences (2000), 323, p. 69-79.

- M. Kaufman, “A Logical Analysis of Differentiative Signaling in the Immune System”, in Proceedings of the Conference “Dynamical Roles of Feedback Circuits” (Cuernavaca, Mexique), (2000), p. 37-39.

- M. Kaufman, F. Andris and O. Leo, “A Logical Analysis of T Cell Activation and Anergy”, Proc. Natl. Acad. Sci. USA, (1999), 96, p. 3894-3899.

- M. Kaufman, F. Andris and O. Leo, “Logical Analysis of Timing-Dependent Signaling Properties in the Immune System”, in “Dynamical Networks in Physics and Biology” (Eds. D. Beysens and G. Forgacs), EDP Sciences, Les Ullis, and Springer Verlag, Berlin (1998), p. 249-261.

- M. Kaufman, F. Andris and O. Leo, “A Model for Antigen-Induced T-Cell Unresponsiveness Based on Autophosphorylative Protein Tyrosine Kinase Activity”, Intl. Immunol. (1996), 8, p.613-624.

- P. Kettunen and M. Kaufman, “Immunologically Motivated Automata Simulations of Autocatalytic Reactions”, Math. Modelling and Sci. Computing (1996), 6.

- D. Gallez, A. De Wit and M. Kaufman, “Dynamics of a Thin Liquid Film with a Surface Chemical Reaction”, J. Colloid Interface Sci. (1996), 180, p.524-536.

- E. Muraille, D. Thieffry, O. Leo and M. Kaufman, “Toxicity and Neuroendocrine Regulation of the Immune Response: A Model Analysis”, J. Theor. Biol. (1996), 183, p. 285-305.

- R. Thomas, D. Thieffry and M. Kaufman, “Dynamical Behaviour of Biological Regulatory Networks.  I.  Biological Role of Feedback Loops and Practical Use of the Concept of the Loop-Characteristic State”, Bull. Math. Biol. (1995), 57, p. 247-276.

- Y. Almirantis and M. Kaufman, “Chiral Selection of Rotating Waves in a Reaction-Diffusion System: The Effect of a Circularly Polarized Electromagnetic Field”, Int. J. Bifurcation and Chaos (1995), 5, p.507-518.

- E. Muraille, O. Leo and M. Kaufman, “The Role of Antigen Presentation in the Regulation of Class-Specific (Th1/Th2) Immune Responses”, J. Biol. Syst. (1995), 3, p. 397-408.

- P. M. Dubois, F. Andris, R. A. Shapiro, L. K. Gilliland, M. Kaufman, J. Urbain, J. A. Ledbetter and O. Leo, “T Cell Long Term Hyporesponsiveness Follows Antigen Receptor Engagement and Results from Defective Signal Transduction”, Eur. J. Immunol. (1994), 24, p. 348-354.

- M. Kaufman and D. Stauffer, “A Dilute Bootstrap Percolation: Lattice Model for T Cell Unresponsiveness in Immunology”, J. Stat. Phys. (1993), 73, p. 843-851.

- Y. Almirantis and M. Kaufman, “Numerical Study of Travelling Waves in a Reaction - Diffusion System : Response to a Spatio-Temporal Forcing”, Int. J. Bifurcation and Chaos (1992), 2, p. 51-60.

- M Kaufman, F. Andris and O. Leo, “Theoretical Insight into Antigen-Induced T-Cell Unresponsiveness" in“Theoretical and Experimental Insights into Immunology” (Eds. A.S. Perelson, G. Weisbuch), Springer-Verlag, NATO ASI Series (1992), H 66, p. 93-115.

- F. Andris, M. Van Mechelen, N. Legrand, P.M. Dubois, M. Kaufman, J. Urbain and O. Leo, “Induction of Long Term but Reversible Unresponsiveness After Activation of Murine T Cell Hybridomas”, Int. Immunol. (1991), 3, p. 609-616.

- P. Marmillot, M. Kaufman and J-F. Hervagault, “Multiple Steady States and Dissipative Structures in a Circular and Linear Array of Three Cells: Numerical and Experimental Approach”, J. Chem. Phys. (1991), 95, p. 1206-1214.

- M. Kaufman, “Logical Treatment of Diffusion”, in “Biological Feedbacks”, R. Thomas and R. d'Ari, CRC Press, Inc., Boca Raton, Florida (1990), Chapter 18.  

- M. Kaufman, R. d'Ari, R. Thomas, “A Model Analysis of the Immune Response”, in “Biological Feedbacks”, R. Thomas and R. d'Ari, CRC Press, Inc., Boca Raton, Florida (1990), Chapter 22.

- M. Kaufman and J. Urbain, “A Model for the Dynamics of Immune Response Based on Idiotypic Regulation”, in “Cell-Cell Signalling: From Experiments to Theoretical  Models” (Ed. A. Goldbeter), Academic Press (1989), p. 303-314.

- J. Urbain, F. Andris, M. Brait, D. Dewit, M. Kaufman, F. Mertens and F. Willems, “The Self-Nonself Discrimination in the Immune System: A Broken Idiotypic Mirror”, in “Cell-Cell Signalling: From Experiments to Theoretical Models” (Ed. A. Goldbeter), Academic Press (1989), p. 249-259.

- M. Kaufman, “Regulation of the Immune Response: A Discrete Mapping Approach”, in “Theories of the Immune Networks” (Eds. H. Atlan and I. R. Cohen), Springer-Verlag (1989), p. 72-84.

- M. Kaufman, “Memory and Paralysis Phenomena in the Immune Response: Interpretation in terms of Multiple Steady State Transitions”, in “From Chemical to Biological Organization” dedicated to Prof. B. Hess on his 65 birthday, Eds. M. Markus, S. Muller and G. Nicolis, Springer Verlag (1988), p. 263-275.

- M. Kaufman, “Role of Multistability in an Immune Response Model: A Combined Discrete and Continuous Approach”, in “Theoretical Immunology” (Ed. A.P. Perelson), Santa Fe Institute Studies in the Sciences of Complexity, Addison-Wesley Pu Co (1988), p. 199-222.

- M. Kaufman and R. Thomas, “Model Analysis of the Bases of Multistationnarity in the Humoral Immune Response”, J. Theor. Biol. (1987), 129, p. 141-162.

- M. Kaufman, “Multiple Steady States and their Role in the Dynamics of Antibody Production”, in “Perspectives in Biological Dynamics and Theoretical Medicine” (Eds. S.H. Koslow, A.J. Mandell, M.F. Shlesinger), Annals of the New York Academy of Sciences (1987), 504, p. 291-292, (extended abstract).

- M. Kaufman, J. Urbain and R. Thomas, “Towards a Logical Analysis of the Immune Response”, J. Theor. Biol. (1985), 114, p. 527-561.

- M. Kaufman, “Logical Analysis of Lymphocytes Interactions During an Immune Response” in “Dynamical Systems and Cellular Automata” (Eds. J. Demongeot, T. Goles, M. Tchuente) Academic Press (1985), p. 207-220.

- T. Erneux and M. Herschkowitz-Kaufman, “Bifurcation Diagram of a Model Chemical Reaction I. Stability Changes of Time-Periodic Solutions”, Bull. Math. Biol. (1979), 41, p. 21-38.

- T. Erneux and M. Herschkowitz-Kaufman, “Time Periodic Patterns for Reaction-Diffusion Systems Operating in Two Dimensions”, Bull. Math. Biol. (1979), 41, p. 767-790.

- M. Kaufman and T. Erneux, “The Bifurcation Diagram of Model Chemical Reactions”, in “Bifurcation Theory and Applications in Scientific Disciplines” (Eds. O. Gurel et O.E. Rossler), Annals of the New York Academy of Sciences (1979), 315, p. 296-313.

- M. Kaufman and T. Erneux, “Bifurcation Diagram of Model Chemical Reactions”, in “Far from Equilibrium” (Ed. C. Vidal), Springer-Verlag, KG. Synergetics (1979), 3, p. 19-21.

- G. Nicolis, T. Erneux and M. Herschkowitz-Kaufman, “Pattern Formation in Reacting and Diffusing Systems”, Advances in Chemical Physics (Ed. S. Rice), Wiley New York (1978), 38, p. 263-315.

- M. Herschkowitz-Kaufman, G. Nicolis and A. Nazarea, “Influence of Gravity on Pattern Formation in Non-Equilibrium Systems”, “Zeitschrift für Flugwissenshaften und Weltraumforschung” (1978), 2, p. 379-386.

- T. Erneux and M. Herschkowitz-Kaufman, “Rotating Waves as Asymptotic Solutions of a Model Chemical Reaction”, J. Chem. Phys. (1977), 66, p. 248-250.

- R. Lefever, M. Herschkowitz-Kaufman, J.W. Turner, “Dissipative Structures in a Soluble Non-Linear Reaction - Diffusion System”, Physics Letters (1977), 60A, p. 389-391.

- M. Kaufman, “Structures Dissipatives dans les Systèmes Chimiques Hors d'Equilibre”, Revue de Bio-Mathématique (1977), 60, p. 235-251.

- M. Herschkowitz-Kaufman, “Some Comments on the Role of Diffusion Coefficients in the Onset of Spatial and Spatio - Temporal Patterns”, J. Chem. (1976), 64, p. 1256.

- M. Herschkowitz-Kaufman, “Bifurcation Analysis of Nonlinear Reaction-Diffusion Equations II”, Bull. Math. Biol. (1975), 37, p. 589-636.

- M. Kaufman, “Oscillations en Biologie” in “Elements de Thermodynamique de la Cellule Vivante”, 17ème cours de perfectionnement de l'Association Vaudoise des chercheurs en physique (1975), Super-Nendaz.

- I. Prigogine and M. Kaufman, “Organisation Spatio-Temporelle et Réactions Chimiques” in “Reaction Kinetics in Heterogeneous Chemical Systems” (Ed. P. Barret), Proc. of the 25th International Meeting of the “Société de Chimie Physique”, Elsevier, Amsterdam (1975), p. 1-49.

- T. Erneux and M. Herschkowitz-Kaufman, “Dissipative Structures in two Dimensions”, Bioph. Chem. (1975), 3, p. 345-354.

- M. Kaufman, Contributions to the Faraday Symposia of the Chemical Society (n°9) in “Physical Chemistry of Oscillatory Phenomena”, the Faraday Society, Chemical Society London (1974), p. 269-271 and p. 70-72.

- M. Herschkowitz-Kaufman, “Can Thermodynamic Explain Biological Order”, in Impact of Science on Society (1973), Vol. XXIII, p. 159-179 (in collaboration with I. Prigogine, A. Babloyantz, G. Nicolis, R. Lefever and I. Stengers).

- M. Herschkowitz-Kaufman and G. Nicolis, “Localized Spatial Structures and Non linear Chemical Waves in Dissipative Systems”, J. Chem. Phys. (1972), 56, p. 1890-1895.

- M. Herschkowitz-Kaufman and J.K. Platten, “Chemical Instabilities and Localized Structures in Non-Homogeneous Media”, Bull. Cl. Sci. Acad. Roy. Belg. (1971), 57, p.26-40.

- G. Nicolis, B. Lavenda and M. Herschkowitz-Kaufman, “Chemical Instabilities and Relaxation Oscillations”, J. Theor. Biol. (1971), 32, p. 283-292.

- M. Kaufman, “Stabilité des Réactions Chimiques en Milieu Non-Homogène”, Actes du colloque “Structure, Stabilité et Fluctuations” (Ed. J.K. Platten), Société Chimique de Belgique (1971), X, p.1-19.

- M. Herschkowitz-Kaufman, “Structure Dissipative dans une Réaction Chimique Homogène”, C.R. Acad. Sci.,Paris (1970), 270c, p. 1049-1052.
- I. Prigogine, R. Lefever, A. Goldbeter and M. Herschkowitz-Kaufman, “Chemical Instabilities in Biological Systems”, Nature (1969), 233, p. 913-916.